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Reaction List for CamKII

Entries are grouped according to Reaction Name and they are alternately color coded using

and

color.
Further ordering can be done to the table header.

indicates that ordering is done according to ascending or descending order.
Keq is calculated only for first order reactions.
Kd is calculated only for second order reactions. [nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules]

	Reaction Name	Accession Name / Accession No.	Pathway Name / Pathway No.	Kf	Kb	Kd	tau	Reagents
1	Stoch_Basal_ CaMKII_PSD	AMPAR_traff_ model0 Accession No. 59	CaMKII Pathway No. 235	1 (s^-1)	1 (s^-1)	Keq = 1(uM)	0.5sec	Substrate: basal_CaMKII_ PSD_control Products: basal_CaMKII_ PSD
2	Stoch_Basal_ CaMKII_PSD	AMPAR_traff_ model1 Accession No. 60	CaMKII Pathway No. 245	1 (s^-1)	1 (s^-1)	Keq = 1(uM)	0.5sec	Substrate: basal_CaMKII_ PSD_control Products: basal_CaMKII_ PSD
3	Stoch_Basal_ CaMKII_PSD	CaMKII_noPKA_ model3 Accession No. 62	Shared_Object_ CaMKII_noPKA_ model3 Pathway No. 257	1 (s^-1)	1 (s^-1)	Keq = 1(uM)	0.5sec	Substrate: basal_CaMKII_ PSD_control Products: basal_CaMKII_ PSD
4	Stoch_Basal_ CaMKII_PSD	CaMKII_model3 Accession No. 63	Shared_Object_ CaMKII_model3 Pathway No. 263	1 (s^-1)	1 (s^-1)	Keq = 1(uM)	0.5sec	Substrate: basal_CaMKII_ PSD_control Products: basal_CaMKII_ PSD
5	Stoch_Basal_ CaMKII_PSD	AMPAR_CaMKII_ strong_coupling Accession No. 64	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	1 (s^-1)	1 (s^-1)	Keq = 1(uM)	0.5sec	Substrate: basal_CaMKII_ PSD_control Products: basal_CaMKII_ PSD
6	Stoch_Basal_ CaMKII_PSD	AMPAR_CaMKII_ weak_coupling Accession No. 65	CaMKII_PSD Pathway No. 292	1 (s^-1)	1 (s^-1)	Keq = 1(uM)	0.5sec	Substrate: basal_CaMKII_ PSD_control Products: basal_CaMKII_ PSD
	This reaction comes into play when stochastic calculations are used. If we do not have a stochastic step here then the levels of basal_CaMKII_PSD are just a fixed number, which is probably not a good representation of stochasticity. Having a reaction for the basal activity ensures that the basal activity too exhibits some fluctuations.
7	dephosp_CaMKIII	CaMKIII Accession No. 90	Shared_Object_ CaMKIII Pathway No. 1093	0.07 (s^-1)	0 (s^-1)	-	-	Substrate: CaMKIII* Products: CaMKIII
8	CaM_act_CaMKII	BCM Accession No. 96	bcm Pathway No. 1118	0.1 (uM^-1 s^-1)	0.1 (s^-1)	Kd(bf) = 1(uM)	-	Substrate: Ca4.CaM CaMKII Products: act_CaMKII
9	CaMKIII_bind_ CaM-Ca4	CaMKIII Accession No. 90	Shared_Object_ CaMKIII Pathway No. 1093	99 (uM^-1 s^-1)	0.09 (s^-1)	Kd(bf) = 0.0009(uM)	-	Substrate: CaM-Ca4 CaMKIII Products: CaMKIII_CaM-Ca4
10	CaMKII-thr286-bi nd-CaM-PSD	AMPAR_traff_ model0 Accession No. 59	CaMKII Pathway No. 235	1000.02 (uM^-1 s^-1)	0.1 (s^-1)	Kd(bf) = 0.0001(uM)	-	Substrate: CaMKII-thr286-PS D CaM-Ca4-PSD Products: CaMKII-thr286-Ca M-PSD
	Same values as for the main compartment Can the main compartment pool of Ca/CaM be used?
11	CaMKII-thr286-bi nd-CaM-PSD	AMPAR_traff_ model1 Accession No. 60	CaMKII Pathway No. 245	1000.02 (uM^-1 s^-1)	0.1 (s^-1)	Kd(bf) = 0.0001(uM)	-	Substrate: CaMKII-thr286-PS D CaM-Ca4-PSD Products: CaMKII-thr286-Ca M-PSD
	Same values as for the main compartment Can the main compartment pool of Ca/CaM be used?
12	CaMKII-thr286-bi nd-CaM-PSD	CaMKII_noPKA_ model3 Accession No. 62	Shared_Object_ CaMKII_noPKA_ model3 Pathway No. 257	1000.02 (uM^-1 s^-1)	0.1 (s^-1)	Kd(bf) = 0.0001(uM)	-	Substrate: CaMKII-thr286-PS D CaM-Ca4-PSD Products: CaMKII-thr286-Ca M-PSD
	Same values as for the main compartment Can the main compartment pool of Ca/CaM be used?
13	CaMKII-thr286-bi nd-CaM-PSD	CaMKII_model3 Accession No. 63	Shared_Object_ CaMKII_model3 Pathway No. 263	1000.02 (uM^-1 s^-1)	0.1 (s^-1)	Kd(bf) = 0.0001(uM)	-	Substrate: CaMKII-thr286-PS D CaM-Ca4-PSD Products: CaMKII-thr286-Ca M-PSD
	Same values as for the main compartment Can the main compartment pool of Ca/CaM be used?
14	CaMKII-thr286-bi nd-CaM-PSD	AMPAR_CaMKII_ strong_coupling Accession No. 64	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	1000.02 (uM^-1 s^-1)	0.1 (s^-1)	Kd(bf) = 0.0001(uM)	-	Substrate: CaMKII-thr286-PS D CaM-Ca4-PSD Products: CaMKII-thr286-Ca M-PSD
	Same values as for the main compartment Can the main compartment pool of Ca/CaM be used?
15	CaMKII-thr286-bi nd-CaM-PSD	AMPAR_CaMKII_ weak_coupling Accession No. 65	CaMKII_PSD Pathway No. 292	1000.02 (uM^-1 s^-1)	0.1 (s^-1)	Kd(bf) = 0.0001(uM)	-	Substrate: CaMKII-thr286-PS D CaM-Ca4-PSD Products: CaMKII-thr286-Ca M-PSD
	Same values as for the main compartment Can the main compartment pool of Ca/CaM be used?
16	CaMKII-diss-CaM	AMPAR_traff_ model0 Accession No. 59	CaMKII Pathway No. 235	5 (s^-1)	0 (uM^-1 s^-1)	-	-	Substrate: CaMKII-CaM-PSD Products: CaM-Ca4-PSD CaMKII-PSD
17	CaMKII-diss-CaM	AMPAR_traff_ model1 Accession No. 60	CaMKII Pathway No. 245	5 (s^-1)	0 (uM^-1 s^-1)	-	-	Substrate: CaMKII-CaM-PSD Products: CaM-Ca4-PSD CaMKII-PSD
18	CaMKII-diss-CaM	CaMKII_noPKA_ model3 Accession No. 62	Shared_Object_ CaMKII_noPKA_ model3 Pathway No. 257	5 (s^-1)	0 (uM^-1 s^-1)	-	-	Substrate: CaMKII-CaM-PSD Products: CaM-Ca4-PSD CaMKII-PSD
19	CaMKII-diss-CaM	CaMKII_model3 Accession No. 63	Shared_Object_ CaMKII_model3 Pathway No. 263	5 (s^-1)	0 (uM^-1 s^-1)	-	-	Substrate: CaMKII-CaM-PSD Products: CaM-Ca4-PSD CaMKII-PSD
20	CaMKII-diss-CaM	AMPAR_CaMKII_ strong_coupling Accession No. 64	Shared_Object_ AMPAR_CaMKII_ strong_coupling Pathway No. 271	5 (s^-1)	0 (uM^-1 s^-1)	-	-	Substrate: CaMKII-CaM-PSD Products: CaM-Ca4-PSD CaMKII-PSD

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